Monday, April 27, 2015

Deep Genomics - meeting 1

Challenges:
-          Don’t necessarily agree on where the value is
o   Do they put the software out for free to “seed” the software
o   Do they sell it to different segments?
-          What is the customer lifecycle?
o   Will a customer come back in 6 weeks or 6 years?

SPIDEX
-          On areas where others can analyze: we are as good or better Accuracy
-          Plus, can analyze more of the genome than competitors
-          Quality product, or buggy?
User Experience
-          Ease of use?  Faster?  Easier to integrate?  Convenient? 
-           
Analyze varients at specific locations across the genome


Customers currently rely on a tool called ANNOVAR
-          They upload genomes to ANNOVAR and ANNOVAR spits out out
-          T
ANNOVAR is an academic tool that was
-          It’s a database of databases
-          If the genome is a book, all of the information in annovar is like the highlighting and notes in that book
-          Bookmarks the locations of the variants
-          Tute Genomics is the UI for ANNOVAR


HLI: company that needs the data to create pharmaceuticals that they can sell
EXAMPLE
$10/sample
Variant analysis costs between $1,000 and $2,000 (partly because of the sequencing)
Cost for analysis is $200 to $400

PARTNERSHIP OPP: package anlysis with the sequencing
Sequencing: blood sample in, sequence of 3 billion letter out (your book)
“variant” calling: identifies the genomes that are different than the “reference”.  Flagging is done during the s

$3,000 for 100 samples (patients)  - $10/patient

KEY QUESTIONS:
How many genomes are sequenced a year:
One machine can sequence 18,000
2015: 400,000 (whole genomes world wide that will sequenced)
5 year outlook is 50 million
Ark
Human Genomes sequenced in 40,000
In 2014: 2014: 235,000

2019:  23,000,000
2024: 4,000,000,000

Different kinds of sequencing:
1.       Fully sequenced – looking at
2.       Looking at “active genome set” – the % of the genome that is actively defining us\

3.       Looking at “key markers” only

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